I am using some ceramic coated JBA headers. The passenger side exit is aimed nicely parallel to the frame. The driver side is a little bit more tight but it fits on my vehicle without any modifications to the header or surrounding parts on my truck (besides the receiving stock exhaust). I am in the middle of a swap myself and the stock exhaust will be a little bit off on the passenger side but you should be able to fabricate the little misalignment there. The driver side however is quite a bit off, and it does get close to the frame but you can make it work.
Here is the passenger side showing how nicely it falls into place. And then below, my driver side. Don’t pay attention to my booger welds, this is just a temporary set up to finish my swap before I have an actual exhaust shop weld me in a full system lol. I am by no means a good welder! :giggle:
Jimmy P is right, stock manifolds are cheap. Will probably be a good idea to go with those since they perform well already. But shorties WILL give you a bit more performance. ~5 hp/5 tq average gain with a shorty type header over an OEM corvette iron shorty on a 5.3. More gains with a larger engine and/or boost but for how much horsepower you get for $500 or more, it definitely isn’t worth the cost over Alpha manifolds to me.
Hope this helps!